IL_3J9W_021

3D structure

PDB id

3J9W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Bacillus subtilis MifM-stalled ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CGCAG*UGAGG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_68393.1

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

26

Unit IDs

3J9W|1|AA|C|589
3J9W|1|AA|G|590
3J9W|1|AA|C|591
3J9W|1|AA|A|592
3J9W|1|AA|G|593
*
3J9W|1|AA|U|766
3J9W|1|AA|G|767
3J9W|1|AA|A|768
3J9W|1|AA|G|769
3J9W|1|AA|G|770

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AH

30S ribosomal protein uS8

Chain AO

30S ribosomal protein uS15

Chain AQ

30S ribosomal protein uS17

Chain BA

Large subunit ribosomal RNA; LSU rRNA