IL_3J9W_025

3D structure

PDB id

3J9W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Bacillus subtilis MifM-stalled ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UGAAAGCC*GAGGG

Length

13 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_82257.1

Basepair signature

cWW-L-R-R-R-L-L-L-L-L-cWW

Number of instances in this motif group

2

Unit IDs

3J9W|1|AA|U|614
3J9W|1|AA|G|615
3J9W|1|AA|A|616
3J9W|1|AA|A|617
3J9W|1|AA|A|618
3J9W|1|AA|G|619
3J9W|1|AA|C|620
3J9W|1|AA|C|621
*
3J9W|1|AA|G|637
3J9W|1|AA|A|638
3J9W|1|AA|G|639
3J9W|1|AA|G|640
3J9W|1|AA|G|641

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AD

30S ribosomal protein uS4

Chain AP

30S ribosomal protein bS16