IL_3J9W_029

3D structure

PDB id

3J9W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Bacillus subtilis MifM-stalled ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GGAAUU*AGGAAC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_54301.1

Basepair signature

cWW-cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

12

Unit IDs

3J9W|1|AA|G|682
3J9W|1|AA|G|683
3J9W|1|AA|A|684
3J9W|1|AA|A|685
3J9W|1|AA|U|686
3J9W|1|AA|U|687
*
3J9W|1|AA|A|721
3J9W|1|AA|G|722
3J9W|1|AA|G|723
3J9W|1|AA|A|724
3J9W|1|AA|A|725
3J9W|1|AA|C|726

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AF

30S ribosomal protein bS6

Chain AK

30S ribosomal protein uS11

Chain AR

30S ribosomal protein bS18

Chain BD

50S ribosomal protein uL2