IL_3J9W_044

3D structure

PDB id

3J9W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Bacillus subtilis MifM-stalled ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GUC*GUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J9W_044 not in the Motif Atlas

Geometric match to IL_5J7L_050

Geometric discrepancy: 0.1417

The information below is about IL_5J7L_050

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_28037.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

65

Unit IDs

3J9W|1|AA|G|1071
3J9W|1|AA|U|1072
3J9W|1|AA|C|1073
*
3J9W|1|AA|G|1202
3J9W|1|AA|U|1203
3J9W|1|AA|C|1204

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AC

30S ribosomal protein uS3

Chain AE

30S ribosomal protein uS5

Chain AJ

30S ribosomal protein uS10