IL_3J9W_053

3D structure

PDB id

3J9W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Bacillus subtilis MifM-stalled ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GCCC*GUAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_99283.1

Basepair signature

cWW-cWW-cSW-cWW-cSH-cWW

Number of instances in this motif group

19

Unit IDs

3J9W|1|AA|G|1410
3J9W|1|AA|C|1411
3J9W|1|AA|C|1412
3J9W|1|AA|C|1413
*
3J9W|1|AA|G|1507
3J9W|1|AA|U|1508
3J9W|1|AA|A|1509
3J9W|1|AA|A|1510
3J9W|1|AA|C|1511

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AX

Transfer RNA; tRNA

Chain AY

mRNA

Chain BA

Large subunit ribosomal RNA; LSU rRNA