3D structure

PDB id
3J9W (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of the Bacillus subtilis MifM-stalled ribosome complex
Experimental method
ELECTRON MICROSCOPY
Resolution
3.9 Å

Loop

Sequence
GCAC*GAGUGAAAGAGAUC
Length
18 nucleotides
Bulged bases
3J9W|1|BA|G|550, 3J9W|1|BA|U|554
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_45805.1
Basepair signature
cWW-tSS-tHH-cSW-bif-tSH-tWH-R-R-tHS-cWW
Number of instances in this motif group
7

Unit IDs

3J9W|1|BA|G|528
3J9W|1|BA|C|529
3J9W|1|BA|A|530
3J9W|1|BA|C|531
*
3J9W|1|BA|G|542
3J9W|1|BA|A|543
3J9W|1|BA|G|544
3J9W|1|BA|U|545
3J9W|1|BA|G|546
3J9W|1|BA|A|547
3J9W|1|BA|A|548
3J9W|1|BA|A|549
3J9W|1|BA|G|550
3J9W|1|BA|A|551
3J9W|1|BA|G|552
3J9W|1|BA|A|553
3J9W|1|BA|U|554
3J9W|1|BA|C|555

Current chains

Chain BA
23S ribosomal RNA

Nearby chains

Chain AZ
MifM
Chain BV
50S ribosomal protein uL22
Chain BW
50S ribosomal protein uL23
Chain BX
50S ribosomal protein uL24

Coloring options:

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