IL_3J9W_088

3D structure

PDB id

3J9W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Bacillus subtilis MifM-stalled ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GGG*CAAUC

Length

8 nucleotides

Bulged bases

3J9W|1|BA|G|823, 3J9W|1|BA|A|835, 3J9W|1|BA|A|836

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_03097.1

Basepair signature

cWW-cWW

Number of instances in this motif group

13

Unit IDs

3J9W|1|BA|G|822
3J9W|1|BA|G|823
3J9W|1|BA|G|824
*
3J9W|1|BA|C|834
3J9W|1|BA|A|835
3J9W|1|BA|A|836
3J9W|1|BA|U|837
3J9W|1|BA|C|838

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain AZ

MifM

Chain B6

50S ribosomal protein bL34

Chain BD

50S ribosomal protein uL2

Chain BF

50S ribosomal protein uL4

Chain BV

50S ribosomal protein uL22