IL_3J9W_092

3D structure

PDB id

3J9W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Bacillus subtilis MifM-stalled ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GAGGUAG*CGAAUGC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_56233.1

Basepair signature

cWW-cWW-L-R-R-cSH-tWH-tHS-cWW

Number of instances in this motif group

6

Unit IDs

3J9W|1|BA|G|903
3J9W|1|BA|A|904
3J9W|1|BA|G|905
3J9W|1|BA|G|906
3J9W|1|BA|U|907
3J9W|1|BA|A|908
3J9W|1|BA|G|909
*
3J9W|1|BA|C|962
3J9W|1|BA|G|963
3J9W|1|BA|A|964
3J9W|1|BA|A|965
3J9W|1|BA|U|966
3J9W|1|BA|G|967
3J9W|1|BA|C|968

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain B2

50S ribosomal protein uL30

Chain BB

5S ribosomal RNA; 5S rRNA

Chain BP

50S ribosomal protein uL16

Chain BZ

50S ribosomal protein bL27