IL_3J9W_106

3D structure

PDB id

3J9W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Bacillus subtilis MifM-stalled ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CUUAGACAA*UCGAG

Length

14 nucleotides

Bulged bases

3J9W|1|BA|A|1092

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_01890.1

Basepair signature

cWW-tSS-L-tSH-tSS-tHS-L-bif-cWW

Number of instances in this motif group

9

Unit IDs

3J9W|1|BA|C|1089
3J9W|1|BA|U|1090
3J9W|1|BA|U|1091
3J9W|1|BA|A|1092
3J9W|1|BA|G|1093
3J9W|1|BA|A|1094
3J9W|1|BA|C|1095
3J9W|1|BA|A|1096
3J9W|1|BA|A|1097
*
3J9W|1|BA|U|1154
3J9W|1|BA|C|1155
3J9W|1|BA|G|1156
3J9W|1|BA|A|1157
3J9W|1|BA|G|1158

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain B8

50S ribosomal protein bL36

Chain BH

50S ribosomal protein uL6

Chain BJ

50S ribosomal protein uL10