IL_3J9W_137

3D structure

PDB id

3J9W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Bacillus subtilis MifM-stalled ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UGCGAAG*CGAAGUAUA

Length

16 nucleotides

Bulged bases

3J9W|1|BA|G|1830, 3J9W|1|BA|A|1845, 3J9W|1|BA|U|1849

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_76485.1

Basepair signature

cWW-cSS-tSS-tHH-tWW-tHH-tHS-cWW

Number of instances in this motif group

6

Unit IDs

3J9W|1|BA|U|1827
3J9W|1|BA|G|1828
3J9W|1|BA|C|1829
3J9W|1|BA|G|1830
3J9W|1|BA|A|1831
3J9W|1|BA|A|1832
3J9W|1|BA|G|1833
*
3J9W|1|BA|C|1842
3J9W|1|BA|G|1843
3J9W|1|BA|A|1844
3J9W|1|BA|A|1845
3J9W|1|BA|G|1846
3J9W|1|BA|U|1847
3J9W|1|BA|A|1848
3J9W|1|BA|U|1849
3J9W|1|BA|A|1850

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain AA

Small subunit ribosomal RNA; SSU rRNA

Chain BD

50S ribosomal protein uL2