IL_3J9W_145

3D structure

PDB id

3J9W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Bacillus subtilis MifM-stalled ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CGAAAUUCCUUG*CCCG

Length

16 nucleotides

Bulged bases

3J9W|1|BA|A|1967, 3J9W|1|BA|U|1973, 3J9W|1|BA|C|1992

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_62969.1

Basepair signature

cWW-L-R-cHW-L-L-L-L-L-cWW

Number of instances in this motif group

9

Unit IDs

3J9W|1|BA|C|1963
3J9W|1|BA|G|1964
3J9W|1|BA|A|1965
3J9W|1|BA|A|1966
3J9W|1|BA|A|1967
3J9W|1|BA|U|1968
3J9W|1|BA|U|1969
3J9W|1|BA|C|1970
3J9W|1|BA|C|1971
3J9W|1|BA|U|1972
3J9W|1|BA|U|1973
3J9W|1|BA|G|1974
*
3J9W|1|BA|C|1990
3J9W|1|BA|C|1991
3J9W|1|BA|C|1992
3J9W|1|BA|G|1993

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain AA

Small subunit ribosomal RNA; SSU rRNA

Chain BD

50S ribosomal protein uL2