IL_3J9W_164

3D structure

PDB id

3J9W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Bacillus subtilis MifM-stalled ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CCAAG*CGACG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_35765.1

Basepair signature

cWW-tSH-tHS-tHS-cWW

Number of instances in this motif group

58

Unit IDs

3J9W|1|BA|C|2495
3J9W|1|BA|C|2496
3J9W|1|BA|A|2497
3J9W|1|BA|A|2498
3J9W|1|BA|G|2499
*
3J9W|1|BA|C|2509
3J9W|1|BA|G|2510
3J9W|1|BA|A|2511
3J9W|1|BA|C|2512
3J9W|1|BA|G|2513

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain B8

50S ribosomal protein bL36

Chain BP

50S ribosomal protein uL16