IL_3J9W_166

3D structure

PDB id

3J9W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Bacillus subtilis MifM-stalled ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CUC*GCGAG

Length

8 nucleotides

Bulged bases

3J9W|1|BA|G|2605, 3J9W|1|BA|A|2606

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J9W_166 not in the Motif Atlas

Geometric match to IL_7RQB_097

Geometric discrepancy: 0.1971

The information below is about IL_7RQB_097

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_90933.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

11

Unit IDs

3J9W|1|BA|C|2539
3J9W|1|BA|U|2540
3J9W|1|BA|C|2541
*
3J9W|1|BA|G|2603
3J9W|1|BA|C|2604
3J9W|1|BA|G|2605
3J9W|1|BA|A|2606
3J9W|1|BA|G|2607

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain AZ

MifM

Chain B4

50S ribosomal protein bL32

Chain BE

50S ribosomal protein uL3