IL_3J9W_170

3D structure

PDB id

3J9W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Bacillus subtilis MifM-stalled ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UUGAG*CAAGAUGAG

Length

14 nucleotides

Bulged bases

3J9W|1|BA|G|2809

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_30312.1

Basepair signature

cWW-R-cSH-tWH-tSH-tHS-cWW

Number of instances in this motif group

4

Unit IDs

3J9W|1|BA|U|2665
3J9W|1|BA|U|2666
3J9W|1|BA|G|2667
3J9W|1|BA|A|2668
3J9W|1|BA|G|2669
*
3J9W|1|BA|C|2803
3J9W|1|BA|A|2804
3J9W|1|BA|A|2805
3J9W|1|BA|G|2806
3J9W|1|BA|A|2807
3J9W|1|BA|U|2808
3J9W|1|BA|G|2809
3J9W|1|BA|A|2810
3J9W|1|BA|G|2811

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BE

50S ribosomal protein uL3

Chain BM

50S ribosomal protein uL13