IL_3J9Y_016

3D structure

PDB id

3J9Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of tetracycline resistance protein TetM bound to a translating E.coli ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

3J9Y|1|A|G|801, 3J9Y|1|A|G|805

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J9Y_016 not in the Motif Atlas

Geometric match to IL_7RQB_018

Geometric discrepancy: 0.0746

The information below is about IL_7RQB_018

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_17470.6

Basepair signature

cWW-tWW-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

3J9Y|1|A|G|674
3J9Y|1|A|A|675
3J9Y|1|A|A|676
3J9Y|1|A|A|677
3J9Y|1|A|C|678
*
3J9Y|1|A|G|799
3J9Y|1|A|A|800
3J9Y|1|A|G|801
3J9Y|1|A|A|802
3J9Y|1|A|U|803
3J9Y|1|A|A|804
3J9Y|1|A|G|805
3J9Y|1|A|C|806

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain E

50S ribosomal protein L4

Chain L

50S ribosomal protein L15