IL_3J9Y_045

3D structure

PDB id

3J9Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of tetracycline resistance protein TetM bound to a translating E.coli ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CUGCGAAG*UGGAG

Length

13 nucleotides

Bulged bases

3J9Y|1|A|C|1211

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J9Y_045 not in the Motif Atlas

Homologous match to IL_5J7L_288

Geometric discrepancy: 0.0944

The information below is about IL_5J7L_288

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.9

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

27

Unit IDs

3J9Y|1|A|C|1208
3J9Y|1|A|U|1209
3J9Y|1|A|G|1210
3J9Y|1|A|C|1211
3J9Y|1|A|G|1212
3J9Y|1|A|A|1213
3J9Y|1|A|A|1214
3J9Y|1|A|G|1215
*
3J9Y|1|A|U|1234
3J9Y|1|A|G|1235
3J9Y|1|A|G|1236
3J9Y|1|A|A|1237
3J9Y|1|A|G|1238

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain Q

50S ribosomal protein L20