IL_3J9Y_049

3D structure

PDB id

3J9Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of tetracycline resistance protein TetM bound to a translating E.coli ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CUAAG*CGAUG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J9Y_049 not in the Motif Atlas

Homologous match to IL_5J7L_292

Geometric discrepancy: 0.0788

The information below is about IL_5J7L_292

Detailed Annotation

UAA/GAN

Broad Annotation

UAA/GAN

Motif group

IL_89021.2

Basepair signature

cWW-L-R-L-R-tHS-cWW

Number of instances in this motif group

6

Unit IDs

3J9Y|1|A|C|1351
3J9Y|1|A|U|1352
3J9Y|1|A|A|1353
3J9Y|1|A|A|1354
3J9Y|1|A|G|1355
*
3J9Y|1|A|C|1376
3J9Y|1|A|G|1377
3J9Y|1|A|A|1378
3J9Y|1|A|U|1379
3J9Y|1|A|G|1380

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L34

Chain C

50S ribosomal protein L2