IL_3J9Y_053

3D structure

PDB id

3J9Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of tetracycline resistance protein TetM bound to a translating E.coli ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GAAG*CCUGC

Length

9 nucleotides

Bulged bases

3J9Y|1|A|U|1559

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J9Y_053 not in the Motif Atlas

Homologous match to IL_5J7L_296

Geometric discrepancy: 0.1283

The information below is about IL_5J7L_296

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_58112.2

Basepair signature

cWW-cWW-L-R-cWW

Number of instances in this motif group

4

Unit IDs

3J9Y|1|A|G|1432
3J9Y|1|A|A|1433
3J9Y|1|A|A|1434
3J9Y|1|A|G|1435
*
3J9Y|1|A|C|1557
3J9Y|1|A|C|1558
3J9Y|1|A|U|1559
3J9Y|1|A|G|1560
3J9Y|1|A|C|1561

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L2