IL_3J9Y_054

3D structure

PDB id

3J9Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of tetracycline resistance protein TetM bound to a translating E.coli ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CUAU*AAAUG

Length

9 nucleotides

Bulged bases

3J9Y|1|A|U|1554

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J9Y_054 not in the Motif Atlas

Homologous match to IL_5J7L_297

Geometric discrepancy: 0.0907

The information below is about IL_5J7L_297

Detailed Annotation

tSH-tHW

Broad Annotation

No text annotation

Motif group

IL_99646.2

Basepair signature

cWW-tWH-tHS-cWW

Number of instances in this motif group

6

Unit IDs

3J9Y|1|A|C|1437
3J9Y|1|A|U|1438
3J9Y|1|A|A|1439
3J9Y|1|A|U|1440
*
3J9Y|1|A|A|1551
3J9Y|1|A|A|1552
3J9Y|1|A|A|1553
3J9Y|1|A|U|1554
3J9Y|1|A|G|1555

Current chains

Chain A

23S ribosomal RNA

Nearby chains