IL_3J9Y_055

3D structure

PDB id

3J9Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of tetracycline resistance protein TetM bound to a translating E.coli ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UAAG*UGAUG

Length

9 nucleotides

Bulged bases

3J9Y|1|A|U|1523

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J9Y_055 not in the Motif Atlas

Homologous match to IL_5J7L_299

Geometric discrepancy: 0.1209

The information below is about IL_5J7L_299

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_68574.4

Basepair signature

cWW-tHH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

3J9Y|1|A|U|1468
3J9Y|1|A|A|1469
3J9Y|1|A|A|1470
3J9Y|1|A|G|1471
*
3J9Y|1|A|U|1520
3J9Y|1|A|G|1521
3J9Y|1|A|A|1522
3J9Y|1|A|U|1523
3J9Y|1|A|G|1524

Current chains

Chain A

23S ribosomal RNA

Nearby chains