IL_3J9Y_066
3D structure
- PDB id
- 3J9Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of tetracycline resistance protein TetM bound to a translating E.coli ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- UGAGG*UGGAG
- Length
- 10 nucleotides
- Bulged bases (A, C, G, U)
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3J9Y_066 not in the Motif Atlas
- Homologous match to IL_5J7L_310
- Geometric discrepancy: 0.1363
- The information below is about IL_5J7L_310
- Detailed Annotation
- Triple sheared
- Broad Annotation
- No text annotation
- Motif group
- IL_96141.2
- Basepair signature
- cWW-tSH-tHS-L-R-cWW
- Number of instances in this motif group
- 3
Unit IDs
3J9Y|1|A|U|1720
3J9Y|1|A|G|1721
3J9Y|1|A|A|1722
3J9Y|1|A|G|1723
3J9Y|1|A|G|1724
*
3J9Y|1|A|U|1736
3J9Y|1|A|G|1737
3J9Y|1|A|G|1738
3J9Y|1|A|A|1739
3J9Y|1|A|G|1740
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
No other chains within 10ÅColoring options: