IL_3J9Y_093

3D structure

PDB id

3J9Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of tetracycline resistance protein TetM bound to a translating E.coli ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CUC*GCGAG

Length

8 nucleotides

Bulged bases

3J9Y|1|A|G|2576, 3J9Y|1|A|A|2577

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J9Y_093 not in the Motif Atlas

Geometric match to IL_5J7L_340

Geometric discrepancy: 0.0816

The information below is about IL_5J7L_340

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_07785.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

3J9Y|1|A|C|2510
3J9Y|1|A|U|2511
3J9Y|1|A|C|2512
*
3J9Y|1|A|G|2574
3J9Y|1|A|C|2575
3J9Y|1|A|G|2576
3J9Y|1|A|A|2577
3J9Y|1|A|G|2578

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 0

50S ribosomal protein L32

Chain D

50S ribosomal protein L3