IL_3J9Y_164

3D structure

PDB id

3J9Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of tetracycline resistance protein TetM bound to a translating E.coli ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CAGCG*CGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J9Y_164 not in the Motif Atlas

Homologous match to IL_4LFB_066

Geometric discrepancy: 0.2664

The information below is about IL_4LFB_066

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_66997.1

Basepair signature

cWW-cWS-L-R-cWW-L

Number of instances in this motif group

3

Unit IDs

3J9Y|1|a|C|1129
3J9Y|1|a|A|1130
3J9Y|1|a|G|1131
3J9Y|1|a|C|1132
3J9Y|1|a|G|1133
*
3J9Y|1|a|C|1141
3J9Y|1|a|G|1142
3J9Y|1|a|G|1143

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain i

30S ribosomal protein S9