IL_3J9Y_186

3D structure

PDB id

3J9Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of tetracycline resistance protein TetM bound to a translating E.coli ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UUAAUUGAUG*UUGAUCGAAG

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J9Y_186 not in the Motif Atlas

Homologous match to IL_5J7L_387

Geometric discrepancy: 0.1085

The information below is about IL_5J7L_387

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61249.1

Basepair signature

cWW-L-R-L-R-tHS-cWW-cWW-tSH-tHS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

3J9Y|1|A|U|1851
3J9Y|1|A|U|1852
3J9Y|1|A|A|1853
3J9Y|1|A|A|1854
3J9Y|1|A|U|1855
3J9Y|1|A|U|1856
3J9Y|1|A|G|1857
3J9Y|1|A|A|1858
3J9Y|1|A|U|1859
3J9Y|1|A|G|1860
*
3J9Y|1|A|U|1882
3J9Y|1|A|U|1883
3J9Y|1|A|G|1884
3J9Y|1|A|A|1885
3J9Y|1|A|U|1886
3J9Y|1|A|C|1887
3J9Y|1|A|G|1888
3J9Y|1|A|A|1889
3J9Y|1|A|A|1890
3J9Y|1|A|G|1891

Current chains

Chain A

23S ribosomal RNA

Nearby chains