IL_3J9Y_202

3D structure

PDB id

3J9Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of tetracycline resistance protein TetM bound to a translating E.coli ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GUUGC*GAACUC

Length

11 nucleotides

Bulged bases

3J9Y|1|a|U|1126

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J9Y_202 not in the Motif Atlas

Homologous match to IL_5J7L_051

Geometric discrepancy: 0.1363

The information below is about IL_5J7L_051

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_06691.1

Basepair signature

cWW-cWS-L-R-L-R-cWW-L

Number of instances in this motif group

2

Unit IDs

3J9Y|1|a|G|1124
3J9Y|1|a|U|1125
3J9Y|1|a|U|1126
3J9Y|1|a|G|1127
3J9Y|1|a|C|1128
*
3J9Y|1|a|G|1144
3J9Y|1|a|A|1145
3J9Y|1|a|A|1146
3J9Y|1|a|C|1147
3J9Y|1|a|U|1148
3J9Y|1|a|C|1149

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain i

30S ribosomal protein S9

Chain j

30S ribosomal protein S10