Motif IL_06691.1 Version IL_06691.1 of this group appears in releases 3.88 to 3.89
#S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | break | 7 | 8 | 9 | 10 | 1-3 | 1-10 | 2-4 | 2-5 | 2-8 | 2-9 | 4-10 | 5-8 | 5-9 | 6-7 | 7-8 | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | IL_5J7L_051 | 5J7L | 0.0000 | 1 | AA | SSU rRNA | G | 1144 | A | 1145 | A | 1146 | C | 1147 | U | 1148 | C | 1149 | * | G | 1124 | U | 1125 | G | 1127 | C | 1128 | cWW | cWW | cWS | ntHS | cWW | cSH | |||||
2 | IL_4V9F_035 | 4V9F | 0.9441 | 2 | 0 | LSU rRNA | G | 958 | C | 959 | A | 961 | C | 962 | C | 963 | G | 964 | * | C | 1004 | A | 1005 | A | 1007 | C | 1008 | tSW | cWW | cSH | ntSW | tWH | cWS | cWW | cWW |
3D structures
Complete motif including flanking bases
Sequence | Counts |
---|---|
GAACUC*GUUGC | 1 |
GCGACCG*CAAAC | 1 |
Non-Watson-Crick part of the motif
Sequence | Counts |
---|---|
AACU*UUG | 1 |
CGACC*AAA | 1 |
- Annotations
-
- (2)
- Basepair signature
- cWW-cWS-L-R-L-R-cWW-L
- Heat map statistics
- Min 0.94 | Avg 0.47 | Max 0.94
Coloring options: