IL_3J9Z_001

3D structure

PDB id

3J9Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Activation of GTP Hydrolysis in mRNA-tRNA Translocation by Elongation Factor G

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GUGGAUG*CUGAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J9Z_001 not in the Motif Atlas

Homologous match to IL_7RQB_001

Geometric discrepancy: 0.1702

The information below is about IL_7RQB_001

Detailed Annotation

Triple sheared with non-canonical cWW

Broad Annotation

Triple sheared

Motif group

IL_66414.6

Basepair signature

cWW-L-R-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

3J9Z|1|LA|G|24
3J9Z|1|LA|U|25
3J9Z|1|LA|G|26
3J9Z|1|LA|G|27
3J9Z|1|LA|A|28
3J9Z|1|LA|U|29
3J9Z|1|LA|G|30
*
3J9Z|1|LA|C|510
3J9Z|1|LA|U|511
3J9Z|1|LA|G|512
3J9Z|1|LA|A|513
3J9Z|1|LA|A|514
3J9Z|1|LA|A|515
3J9Z|1|LA|C|516

Current chains

Chain LA

23S ribosomal RNA

Nearby chains

Chain L1

50S ribosomal protein L32

Chain LO

50S ribosomal protein L20

Chain LQ

50S ribosomal protein L22