IL_3J9Z_006

3D structure

PDB id

3J9Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Activation of GTP Hydrolysis in mRNA-tRNA Translocation by Elongation Factor G

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GGAACUG*CUAAGUAC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J9Z_006 not in the Motif Atlas

Homologous match to IL_7RQB_006

Geometric discrepancy: 0.0985

The information below is about IL_7RQB_006

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_04346.7

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

15

Unit IDs

3J9Z|1|LA|G|188
3J9Z|1|LA|G|189
3J9Z|1|LA|A|190
3J9Z|1|LA|A|191
3J9Z|1|LA|C|192
3J9Z|1|LA|U|193
3J9Z|1|LA|G|194
*
3J9Z|1|LA|C|201
3J9Z|1|LA|U|202
3J9Z|1|LA|A|203
3J9Z|1|LA|A|204
3J9Z|1|LA|G|205
3J9Z|1|LA|U|206
3J9Z|1|LA|A|207
3J9Z|1|LA|C|208

Current chains

Chain LA

23S ribosomal RNA

Nearby chains

Chain L3

50S ribosomal protein L34

Chain L4

50S ribosomal protein L35

Chain LH

50S ribosomal protein L15

Chain LV

50S ribosomal protein L28