IL_3J9Z_036

3D structure

PDB id

3J9Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Activation of GTP Hydrolysis in mRNA-tRNA Translocation by Elongation Factor G

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UCCCAAAG*CA

Length

10 nucleotides

Bulged bases

3J9Z|1|LA|A|1009

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J9Z_036 not in the Motif Atlas

Homologous match to IL_7RQB_037

Geometric discrepancy: 0.1405

The information below is about IL_7RQB_037

Detailed Annotation

SSU/LSU pseudoknot

Broad Annotation

No text annotation

Motif group

IL_15861.7

Basepair signature

cWW-L-cWW-L-L-R-cSH

Number of instances in this motif group

12

Unit IDs

3J9Z|1|LA|U|1004
3J9Z|1|LA|C|1005
3J9Z|1|LA|C|1006
3J9Z|1|LA|C|1007
3J9Z|1|LA|A|1008
3J9Z|1|LA|A|1009
3J9Z|1|LA|A|1010
3J9Z|1|LA|G|1011
*
3J9Z|1|LA|C|1150
3J9Z|1|LA|A|1151

Current chains

Chain LA

23S ribosomal RNA

Nearby chains

Chain LF

50S ribosomal protein L13

Chain LO

50S ribosomal protein L20