IL_3J9Z_038

3D structure

PDB id

3J9Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Activation of GTP Hydrolysis in mRNA-tRNA Translocation by Elongation Factor G

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UUAAGUG*CUAAA

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J9Z_038 not in the Motif Atlas

Homologous match to IL_4WF9_039

Geometric discrepancy: 0.1991

The information below is about IL_4WF9_039

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_57188.5

Basepair signature

cWW-tWW-L-tWW-cWW-cSH

Number of instances in this motif group

5

Unit IDs

3J9Z|1|LA|U|1018
3J9Z|1|LA|U|1019
3J9Z|1|LA|A|1020
3J9Z|1|LA|A|1021
3J9Z|1|LA|G|1022
3J9Z|1|LA|U|1023
3J9Z|1|LA|G|1024
*
3J9Z|1|LA|C|1140
3J9Z|1|LA|U|1141
3J9Z|1|LA|A|1142
3J9Z|1|LA|A|1143
3J9Z|1|LA|A|1144

Current chains

Chain LA

23S ribosomal RNA

Nearby chains

Chain L5

50S ribosomal protein L36

Chain L8

50S ribosomal protein L6

Chain LF

50S ribosomal protein L13