IL_3J9Z_040

3D structure

PDB id

3J9Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Activation of GTP Hydrolysis in mRNA-tRNA Translocation by Elongation Factor G

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GAUG*CGC

Length

7 nucleotides

Bulged bases

3J9Z|1|LA|U|1033

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J9Z_040 not in the Motif Atlas

Homologous match to IL_4WF9_041

Geometric discrepancy: 0.1967

The information below is about IL_4WF9_041

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_57744.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

22

Unit IDs

3J9Z|1|LA|G|1031
3J9Z|1|LA|A|1032
3J9Z|1|LA|U|1033
3J9Z|1|LA|G|1034
*
3J9Z|1|LA|C|1121
3J9Z|1|LA|G|1122
3J9Z|1|LA|C|1123

Current chains

Chain LA

23S ribosomal RNA

Nearby chains

Chain L5

50S ribosomal protein L36

Chain LB

5S ribosomal RNA; 5S rRNA

Chain LI

50S ribosomal protein L16