IL_3J9Z_044

3D structure

PDB id

3J9Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Activation of GTP Hydrolysis in mRNA-tRNA Translocation by Elongation Factor G

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GAAA*UC

Length

6 nucleotides

Bulged bases

3J9Z|1|LA|A|1088

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J9Z_044 not in the Motif Atlas

Geometric match to IL_3OXE_003

Geometric discrepancy: 0.295

The information below is about IL_3OXE_003

Detailed Annotation

Major groove platform

Broad Annotation

No text annotation

Motif group

IL_48076.6

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

41

Unit IDs

3J9Z|1|LA|G|1087
3J9Z|1|LA|A|1088
3J9Z|1|LA|A|1089
3J9Z|1|LA|A|1090
*
3J9Z|1|LA|U|1101
3J9Z|1|LA|C|1102

Current chains

Chain LA

23S ribosomal RNA

Nearby chains

Chain L5

50S ribosomal protein L36

Chain LE

50S ribosomal protein L11