IL_3J9Z_062

3D structure

PDB id

3J9Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Activation of GTP Hydrolysis in mRNA-tRNA Translocation by Elongation Factor G

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GAGAAC*GAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J9Z_062 not in the Motif Atlas

Homologous match to IL_5J7L_304

Geometric discrepancy: 0.0979

The information below is about IL_5J7L_304

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_12566.4

Basepair signature

cWW-L-tHS-L-cWW-L

Number of instances in this motif group

5

Unit IDs

3J9Z|1|LA|G|1651
3J9Z|1|LA|A|1652
3J9Z|1|LA|G|1653
3J9Z|1|LA|A|1654
3J9Z|1|LA|A|1655
3J9Z|1|LA|C|1656
*
3J9Z|1|LA|G|2004
3J9Z|1|LA|A|2005
3J9Z|1|LA|C|2006

Current chains

Chain LA

23S ribosomal RNA

Nearby chains

Chain LJ

50S ribosomal protein L17

Chain LX

50S ribosomal protein L3