IL_3J9Z_065

3D structure

PDB id

3J9Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Activation of GTP Hydrolysis in mRNA-tRNA Translocation by Elongation Factor G

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

ACUAGG*CUGU

Length

10 nucleotides

Bulged bases

3J9Z|1|LA|G|1992

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J9Z_065 not in the Motif Atlas

Homologous match to IL_5J7L_307

Geometric discrepancy: 0.1175

The information below is about IL_5J7L_307

Detailed Annotation

Intercalated tWH

Broad Annotation

Intercalated tWH

Motif group

IL_76758.2

Basepair signature

cWW-L-R-L-cWW-L-L

Number of instances in this motif group

7

Unit IDs

3J9Z|1|LA|A|1669
3J9Z|1|LA|C|1670
3J9Z|1|LA|U|1671
3J9Z|1|LA|A|1672
3J9Z|1|LA|G|1673
3J9Z|1|LA|G|1674
*
3J9Z|1|LA|C|1990
3J9Z|1|LA|U|1991
3J9Z|1|LA|G|1992
3J9Z|1|LA|U|1993

Current chains

Chain LA

23S ribosomal RNA

Nearby chains

Chain LG

50S ribosomal protein L14

Chain LX

50S ribosomal protein L3