IL_3J9Z_080

3D structure

PDB id

3J9Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Activation of GTP Hydrolysis in mRNA-tRNA Translocation by Elongation Factor G

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GUG*CC

Length

5 nucleotides

Bulged bases

3J9Z|1|LA|U|2068

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J9Z_080 not in the Motif Atlas

Geometric match to IL_7RQB_080

Geometric discrepancy: 0.1469

The information below is about IL_7RQB_080

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.16

Basepair signature

cWW-L-cWW

Number of instances in this motif group

116

Unit IDs

3J9Z|1|LA|G|2067
3J9Z|1|LA|U|2068
3J9Z|1|LA|G|2069
*
3J9Z|1|LA|C|2442
3J9Z|1|LA|C|2443

Current chains

Chain LA

23S ribosomal RNA

Nearby chains

Chain L6

50S ribosomal protein L4

Chain LH

50S ribosomal protein L15