IL_3J9Z_096

3D structure

PDB id

3J9Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Activation of GTP Hydrolysis in mRNA-tRNA Translocation by Elongation Factor G

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CCAAG*CGACG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J9Z_096 not in the Motif Atlas

Homologous match to IL_5J7L_338

Geometric discrepancy: 0.1216

The information below is about IL_5J7L_338

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_17948.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

3J9Z|1|LA|C|2466
3J9Z|1|LA|C|2467
3J9Z|1|LA|A|2468
3J9Z|1|LA|A|2469
3J9Z|1|LA|G|2470
*
3J9Z|1|LA|C|2480
3J9Z|1|LA|G|2481
3J9Z|1|LA|A|2482
3J9Z|1|LA|C|2483
3J9Z|1|LA|G|2484

Current chains

Chain LA

23S ribosomal RNA

Nearby chains

Chain L5

50S ribosomal protein L36

Chain LI

50S ribosomal protein L16