3D structure

PDB id
3J9Z (explore in PDB, NAKB, or RNA 3D Hub)
Description
Activation of GTP Hydrolysis in mRNA-tRNA Translocation by Elongation Factor G
Experimental method
ELECTRON MICROSCOPY
Resolution
3.6 Å

Loop

Sequence
CUGAAG*CGUG
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_3J9Z_108 not in the Motif Atlas
Homologous match to IL_5J7L_351
Geometric discrepancy: 0.1873
The information below is about IL_5J7L_351
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_29471.1
Basepair signature
cWW-cWW-L-tHS-L-cWW
Number of instances in this motif group
1

Unit IDs

3J9Z|1|LA|C|2806
3J9Z|1|LA|U|2807
3J9Z|1|LA|G|2808
3J9Z|1|LA|A|2809
3J9Z|1|LA|A|2810
3J9Z|1|LA|G|2811
*
3J9Z|1|LA|C|2889
3J9Z|1|LA|G|2890
3J9Z|1|LA|U|2891
3J9Z|1|LA|G|2892

Current chains

Chain LA
23S ribosomal RNA

Nearby chains

Chain L1
50S ribosomal protein L32
Chain LQ
50S ribosomal protein L22
Chain LX
50S ribosomal protein L3

Coloring options:


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