IL_3J9Z_110

3D structure

PDB id

3J9Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Activation of GTP Hydrolysis in mRNA-tRNA Translocation by Elongation Factor G

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GGUG*CUAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J9Z_110 not in the Motif Atlas

Homologous match to IL_5J7L_353

Geometric discrepancy: 0.1447

The information below is about IL_5J7L_353

Detailed Annotation

Multiple bulged bases with non-canonical cWW

Broad Annotation

Multiple bulged bases with non-canonical cWW

Motif group

IL_64231.5

Basepair signature

cWW-cWW-L-R-L-cWW

Number of instances in this motif group

11

Unit IDs

3J9Z|1|LA|G|2843
3J9Z|1|LA|G|2844
3J9Z|1|LA|U|2845
3J9Z|1|LA|G|2846
*
3J9Z|1|LA|C|2870
3J9Z|1|LA|U|2871
3J9Z|1|LA|A|2872
3J9Z|1|LA|A|2873
3J9Z|1|LA|C|2874

Current chains

Chain LA

23S ribosomal RNA

Nearby chains

Chain LJ

50S ribosomal protein L17

Chain LM

50S ribosomal protein L19

Chain LX

50S ribosomal protein L3