IL_3J9Z_119

3D structure

PDB id

3J9Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Activation of GTP Hydrolysis in mRNA-tRNA Translocation by Elongation Factor G

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CCUAAC*GGG

Length

9 nucleotides

Bulged bases

3J9Z|1|SA|C|48, 3J9Z|1|SA|A|51

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J9Z_119 not in the Motif Atlas

Geometric match to IL_5J7L_003

Geometric discrepancy: 0.1544

The information below is about IL_5J7L_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_14177.2

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

2

Unit IDs

3J9Z|1|SA|C|47
3J9Z|1|SA|C|48
3J9Z|1|SA|U|49
3J9Z|1|SA|A|50
3J9Z|1|SA|A|51
3J9Z|1|SA|C|52
*
3J9Z|1|SA|G|359
3J9Z|1|SA|G|360
3J9Z|1|SA|G|361

Current chains

Chain SA

16S ribosomal RNA

Nearby chains

Chain S1

Elongation factor G

Chain SL

30S ribosomal protein S12