IL_3J9Z_133

3D structure

PDB id

3J9Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Activation of GTP Hydrolysis in mRNA-tRNA Translocation by Elongation Factor G

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UUG*CA

Length

5 nucleotides

Bulged bases

3J9Z|1|SA|U|368

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J9Z_133 not in the Motif Atlas

Geometric match to IL_5J7L_017

Geometric discrepancy: 0.1781

The information below is about IL_5J7L_017

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

117

Unit IDs

3J9Z|1|SA|U|367
3J9Z|1|SA|U|368
3J9Z|1|SA|G|369
*
3J9Z|1|SA|C|392
3J9Z|1|SA|A|393

Current chains

Chain SA

16S ribosomal RNA

Nearby chains

Chain S1

Elongation factor G

Chain SP

30S ribosomal protein S16