IL_3J9Z_154

3D structure

PDB id

3J9Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Activation of GTP Hydrolysis in mRNA-tRNA Translocation by Elongation Factor G

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CAAAC*GGUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J9Z_154 not in the Motif Atlas

Homologous match to IL_4LFB_033

Geometric discrepancy: 0.0998

The information below is about IL_4LFB_033

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_17136.7

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

14

Unit IDs

3J9Z|1|SA|C|779
3J9Z|1|SA|A|780
3J9Z|1|SA|A|781
3J9Z|1|SA|A|782
3J9Z|1|SA|C|783
*
3J9Z|1|SA|G|799
3J9Z|1|SA|G|800
3J9Z|1|SA|U|801
3J9Z|1|SA|A|802
3J9Z|1|SA|G|803

Current chains

Chain SA

16S ribosomal RNA

Nearby chains

Chain LA

Large subunit ribosomal RNA; LSU rRNA

Chain SK

30S ribosomal protein S11

Chain SU

30S ribosomal protein S21