IL_3J9Z_157

3D structure

PDB id

3J9Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Activation of GTP Hydrolysis in mRNA-tRNA Translocation by Elongation Factor G

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GA*UAC

Length

5 nucleotides

Bulged bases

3J9Z|1|SA|A|1394

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J9Z_157 not in the Motif Atlas

Homologous match to IL_4LFB_035

Geometric discrepancy: 0.1711

The information below is about IL_4LFB_035

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.5

Basepair signature

cWW-L-cWW

Number of instances in this motif group

129

Unit IDs

3J9Z|1|SA|G|922
3J9Z|1|SA|A|923
*
3J9Z|1|SA|U|1393
3J9Z|1|SA|A|1394
3J9Z|1|SA|C|1395

Current chains

Chain SA

16S ribosomal RNA

Nearby chains

Chain SE

30S ribosomal protein S5