IL_3J9Z_165

3D structure

PDB id

3J9Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Activation of GTP Hydrolysis in mRNA-tRNA Translocation by Elongation Factor G

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UG*CAA

Length

5 nucleotides

Bulged bases

3J9Z|1|SA|A|1196

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J9Z_165 not in the Motif Atlas

Geometric match to IL_5J7L_049

Geometric discrepancy: 0.3427

The information below is about IL_5J7L_049

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.5

Basepair signature

cWW-L-cWW

Number of instances in this motif group

129

Unit IDs

3J9Z|1|SA|U|1060
3J9Z|1|SA|G|1061
*
3J9Z|1|SA|C|1195
3J9Z|1|SA|A|1196
3J9Z|1|SA|A|1197

Current chains

Chain SA

16S ribosomal RNA

Nearby chains

Chain SC

30S ribosomal protein S3

Chain SE

30S ribosomal protein S5

Chain SJ

30S ribosomal protein S10

Chain SN

30S ribosomal protein S14