IL_3J9Z_168

3D structure

PDB id

3J9Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Activation of GTP Hydrolysis in mRNA-tRNA Translocation by Elongation Factor G

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CAGC*GG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J9Z_168 not in the Motif Atlas

Homologous match to IL_5J7L_052

Geometric discrepancy: 0.2251

The information below is about IL_5J7L_052

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_15052.4

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

8

Unit IDs

3J9Z|1|SA|C|1129
3J9Z|1|SA|A|1130
3J9Z|1|SA|G|1131
3J9Z|1|SA|C|1132
*
3J9Z|1|SA|G|1142
3J9Z|1|SA|G|1143

Current chains

Chain SA

16S ribosomal RNA

Nearby chains

Chain SC

30S ribosomal protein S3

Chain SI

30S ribosomal protein S9

Chain SJ

30S ribosomal protein S10