IL_3J9Z_177

3D structure

PDB id

3J9Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Activation of GTP Hydrolysis in mRNA-tRNA Translocation by Elongation Factor G

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CAUG*UGGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J9Z_177 not in the Motif Atlas

Homologous match to IL_6CZR_168

Geometric discrepancy: 0.2623

The information below is about IL_6CZR_168

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67743.1

Basepair signature

cWW-cWW-cWH-cWW

Number of instances in this motif group

9

Unit IDs

3J9Z|1|SA|C|1412
3J9Z|1|SA|A|1413
3J9Z|1|SA|U|1414
3J9Z|1|SA|G|1415
*
3J9Z|1|SA|U|1485
3J9Z|1|SA|G|1486
3J9Z|1|SA|G|1487
3J9Z|1|SA|G|1488

Current chains

Chain SA

16S ribosomal RNA

Nearby chains

Chain LA

Large subunit ribosomal RNA; LSU rRNA

Chain SL

30S ribosomal protein S12