IL_3J9Z_187

3D structure

PDB id

3J9Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Activation of GTP Hydrolysis in mRNA-tRNA Translocation by Elongation Factor G

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CGUU*AAGUG

Length

9 nucleotides

Bulged bases

3J9Z|1|LA|G|1248

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J9Z_187 not in the Motif Atlas

Geometric match to IL_7KJT_003

Geometric discrepancy: 0.3303

The information below is about IL_7KJT_003

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67085.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

56

Unit IDs

3J9Z|1|LA|C|1196
3J9Z|1|LA|G|1197
3J9Z|1|LA|U|1198
3J9Z|1|LA|U|1199
*
3J9Z|1|LA|A|1246
3J9Z|1|LA|A|1247
3J9Z|1|LA|G|1248
3J9Z|1|LA|U|1249
3J9Z|1|LA|G|1250

Current chains

Chain LA

23S ribosomal RNA

Nearby chains

Chain L6

50S ribosomal protein L4

Chain LH

50S ribosomal protein L15

Chain LO

50S ribosomal protein L20