IL_3J9Z_190

3D structure

PDB id

3J9Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Activation of GTP Hydrolysis in mRNA-tRNA Translocation by Elongation Factor G

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CGUGUAG*UGAGGCG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J9Z_190 not in the Motif Atlas

Geometric match to IL_4WF9_031

Geometric discrepancy: 0.3514

The information below is about IL_4WF9_031

Detailed Annotation

7x7 Sarcin-Ricin with intercalated A; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_29198.2

Basepair signature

cWW-cWW-L-R-cSH-R-tWH-tHS-cWW

Number of instances in this motif group

4

Unit IDs

3J9Z|1|LA|C|1472
3J9Z|1|LA|G|1473
3J9Z|1|LA|U|1474
3J9Z|1|LA|G|1475
3J9Z|1|LA|U|1476
3J9Z|1|LA|A|1477
3J9Z|1|LA|G|1478
*
3J9Z|1|LA|U|1513
3J9Z|1|LA|G|1514
3J9Z|1|LA|A|1515
3J9Z|1|LA|G|1516
3J9Z|1|LA|G|1517
3J9Z|1|LA|C|1518
3J9Z|1|LA|G|1519

Current chains

Chain LA

23S ribosomal RNA

Nearby chains