IL_3J9Z_210

3D structure

PDB id

3J9Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Activation of GTP Hydrolysis in mRNA-tRNA Translocation by Elongation Factor G

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

AUAAGUAA*UGAAAUU

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J9Z_210 not in the Motif Atlas

Homologous match to IL_5J7L_289

Geometric discrepancy: 0.0969

The information below is about IL_5J7L_289

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_04346.10

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

15

Unit IDs

3J9Z|1|LA|A|1262
3J9Z|1|LA|U|1263
3J9Z|1|LA|A|1264
3J9Z|1|LA|A|1265
3J9Z|1|LA|G|1266
3J9Z|1|LA|U|1267
3J9Z|1|LA|A|1268
3J9Z|1|LA|A|1269
*
3J9Z|1|LA|U|2011
3J9Z|1|LA|G|2012
3J9Z|1|LA|A|2013
3J9Z|1|LA|A|2014
3J9Z|1|LA|A|2015
3J9Z|1|LA|U|2016
3J9Z|1|LA|U|2017

Current chains

Chain LA

23S ribosomal RNA

Nearby chains

Chain L1

50S ribosomal protein L32

Chain L6

50S ribosomal protein L4

Chain LQ

50S ribosomal protein L22