3D structure

PDB id
3JA1 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Activation of GTP Hydrolysis in mRNA-tRNA Translocation by Elongation Factor G
Experimental method
ELECTRON MICROSCOPY
Resolution
3.6 Å

Loop

Sequence
GGAACUG*CUAAGUAC
Length
15 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_3JA1_006 not in the Motif Atlas
Homologous match to IL_7RQB_006
Geometric discrepancy: 0.1187
The information below is about IL_7RQB_006
Detailed Annotation
8x7 Sarcin-Ricin; G-bulge
Broad Annotation
Sarcin-Ricin; G-bulge
Motif group
IL_04346.7
Basepair signature
cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
Number of instances in this motif group
15

Unit IDs

3JA1|1|LA|G|188
3JA1|1|LA|G|189
3JA1|1|LA|A|190
3JA1|1|LA|A|191
3JA1|1|LA|C|192
3JA1|1|LA|U|193
3JA1|1|LA|G|194
*
3JA1|1|LA|C|201
3JA1|1|LA|U|202
3JA1|1|LA|A|203
3JA1|1|LA|A|204
3JA1|1|LA|G|205
3JA1|1|LA|U|206
3JA1|1|LA|A|207
3JA1|1|LA|C|208

Current chains

Chain LA
23S ribosomal RNA

Nearby chains

Chain L6
50S ribosomal protein L35
Chain LN
50S ribosomal protein L15
Chain LZ
50S ribosomal protein L28

Coloring options:


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