IL_3JA1_006

3D structure

PDB id

3JA1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Activation of GTP Hydrolysis in mRNA-tRNA Translocation by Elongation Factor G

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GGAACUG*CUAAGUAC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JA1_006 not in the Motif Atlas

Homologous match to IL_7RQB_006

Geometric discrepancy: 0.1187

The information below is about IL_7RQB_006

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_04346.7

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

15

Unit IDs

3JA1|1|LA|G|188
3JA1|1|LA|G|189
3JA1|1|LA|A|190
3JA1|1|LA|A|191
3JA1|1|LA|C|192
3JA1|1|LA|U|193
3JA1|1|LA|G|194
*
3JA1|1|LA|C|201
3JA1|1|LA|U|202
3JA1|1|LA|A|203
3JA1|1|LA|A|204
3JA1|1|LA|G|205
3JA1|1|LA|U|206
3JA1|1|LA|A|207
3JA1|1|LA|C|208

Current chains

Chain LA

23S ribosomal RNA

Nearby chains

Chain L6

50S ribosomal protein L35

Chain LN

50S ribosomal protein L15

Chain LZ

50S ribosomal protein L28