IL_3JA1_033

3D structure

PDB id

3JA1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Activation of GTP Hydrolysis in mRNA-tRNA Translocation by Elongation Factor G

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CCA*UG

Length

5 nucleotides

Bulged bases

3JA1|1|LA|C|995

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JA1_033 not in the Motif Atlas

Homologous match to IL_4WF9_035

Geometric discrepancy: 0.2284

The information below is about IL_4WF9_035

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_61258.15

Basepair signature

cWW-L-cWW

Number of instances in this motif group

41

Unit IDs

3JA1|1|LA|C|994
3JA1|1|LA|C|995
3JA1|1|LA|A|996
*
3JA1|1|LA|U|1159
3JA1|1|LA|G|1160

Current chains

Chain LA

23S ribosomal RNA

Nearby chains

Chain L1

50S ribosomal protein L30

Chain LL

50S ribosomal protein L13

Chain LS

50S ribosomal protein L20

Chain LT

50S ribosomal protein L21